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Aquaculture Research Institute

Physical Address:
799 Poultry Hill Way
Moscow, ID  83844

Phone: 208-885-5830
aqua@uidaho.edu

Mailing Address:
875 Perimeter Drive
MS 2260
Moscow, Idaho  83844-2260

Directions

Hagerman Fish Culture Experiment Station

Physical Address:
3059 Natl Fish Hatchery Rd # F
Hagerman, ID  83332

Phone: 208-837-9096
aqua@uidaho.edu

Map

Reports and Publications

Hudson, K.S. and K.D. Cain. Pathogens and parasites. 2017. in:Aquavulture: Farming aquatic animals and plants. Volume 3, (ed) Southpage, P.C. Wiley-Blackwell publishing (In press). 

Sudheesh, P.S. and K.D. Cain.  2017. Prospects and challenges of developing and commercializing immersion vaccines for aquaculture.  International Biology Review 1(1):1-20.  

Terrazas, M.M. Adams, J.R., Sudheesh, P.S. and K.D. Cain. 2017. Effects of diel temperature fluctuation on growth, stress response and immune function of burbot. Transactions of the American Fisheries Society.  (Accepted).  

Araneda, C., Larrain M.A., Hecht, B. and S.R. Narum. 2016. Adaptive genetic variation distinguishes Chilean blue mussels, Mytilus chilensis from different environments.  Ecology and Evolution, 6:2632-3644.

Ashton, N.K., Campbell, M.R., Anders, P.J., Powell, M.S. and K.D. Cain. 2016.  Evaluating microsatellite markers for parentage-based tagging of hatchery burbot. Northwest Science, 90(3)249-259.

Bledsoe, J.W., Peterson, B.C, Swanson, K.S. and B.C. Small. 2016. Ontogentic characterization of the intestinal microbiota of channel catfish through 165 rRNA gene sequencing reveals insights on temporal shifts and the influence of environmental microbates. PLoS ONE 11(11):0163379.doi.10.1371/journal.pone.0166379.

Elizondo-Reynal, E., Medina-Gonzalez, R., Nieto-Lopez, M.G., Ortez-Lopez, R., Elizonda-Gonzalez, R., Powell, M.S., Ricque-Marie, D. and L.E. Cruz-Suarez. 2016. Consumption of Ulva clathrata as a dietary supplement stimulates immune and lipid metabolism genes in pacific white shrimp Litopenaeus vannamei. Journal of Applied Phycology. DOI 10.1007/s10811-016-0889-1.

Fenn, C.M., Bledsoe, J.W. and B.C. Small. 2016. Functional characterization of insulin-like growth factors in an ancestral fish species, the Shovelnose sturgeon Scaphirhynchus platohynchus. Comparative Biochemistry Physiology Part A. 199:21-27.

Ghosh, B., Cain, K.D., Nowak, B.F. and A.R. Bridle.  2016. Microencapsulation of a putative probiotic enterobacter species, C6-6, to protect rainbrow trout, Oncorhynchus mykiss (Walbaum) against bacterial coldwater disease. Journal of Fish Diseases, 39(1)1-11.  

Hand, B.K., Muhlfield, C.C., Wade, A.A., Kovach, R.P., Whited, D.C., Narum, S.R., Matala, A.P., Ackerman, M.W., Garner, B.A., Kimbell, J.S., Stanford, J.A. and G.L. Luikart. 2016. Climate variables explain neutral and adaptive variation within salmonid metapopulations:the importance of replication in landscapte genetics. Molecular Ecology, 25:689-705.

Hardy, R.W. 2016. Early research on nutrition and feeding of Mandarin fish (Siniperca chuatsi) Basilewsky, 1855, in China.  In Press.  

Hess, J.E., Ackerman, M.W., Fryer, J.K., Hasselman, D.J., Steele, C.A., Stephenson, J.J., Whiteaker, J.M. and S.R. Narum. 2016. Differential adult migration-timing and stock-specific abundance of steelhead in mixed stock assemblages.  ICES Journal of Marine Science, 73:2606-2615.

Hess, M.A., Hess, J.E., Matala, A.P., French, R.A., Steele, C.A., Lovtang, J. and S.R. Narum. 2016. Migrating adult steelhead utilizing thermal refuge during summer periods with high water temperatures. ICES Journal of Marine Science, 73:2616-2624.  

Hess, J.E., Zendt, J.S., Matala, A.R. and S.R. Narum. 2016. Genetic basis of adult migration timing in anadromous steelhead discovered through multivariate association testing. Proceedings of the Royal Society B 283:20153064.

Hinrichsen, R.A., Steele, C.A., Ackerman, M.W., Campbell, M.R., Narum, S.R., Hess, M.A., Young, W.P., Shields, B.A., Nez Perce Tribe and B.L. Maschhoff. 2016. Maximum likelihood estimation of the proportion of hatchery-origin fish on spawning grounds using coded wire and parentage-based tagging. Transactions of the American Fisheries Society, 145:671-686.  

Kovach, R.P., Hand, B.K., Hohenlohe, P.A., Cosart, T.F., Boyer, M.C., Neville, H.H., Muhlfeld, C.C., Amish, S.J., Carim, K., Narum, S.R., Lowe, W.H., Allendorf, F.W. and G. Luikart. 2016. Vive la resistance:genome-wide selection against introduced alleles in invasive hybrid zones. Proceedings of the Royal Society B:283:20161380.
 
Matala, A.P., Hatch, D.R., Everett, S., Ackerman, M.W., Bowersox, B., Campbell, M. and S.R. Narum.  2016.  What goes up does not come down: compositional and demographic differences between steelhead returning to spawn and emigrating post spawned kelts. ICES Journal of Marine Science, 73:2595-2605.
 
Nelson, L.R. and B.C. Small. 2016. Effects of season, geographical origin, and Asian carp species on the fillet quality of fish harvested from the Illinois River. SDRP Journal of Aquaculture & Fish Science, 1:1-12.  
 
Nichols, K.M., Korzflay, C.C., and S.R. Narum.  2016. Genomic signatures among Oncorhynchus nerka to inform conservation and management of endangered sockeye salmon.  Evolutionary Applications, 9:1203-1311. DOI:10.1111/eva.12412.  
 
Overturf, K., Barrows, F.T., Hardy, R.W., Brezas, A. and A. Dumas.  2016.  Energy composition of diet affects muscle fiber recruitment body composition and growth trajectory in rainbow trout Oncorhynchus mykiss.  Aquaculture, 457:1-14.

Schroeter, J., Peterson, B.C. and B.C. Small. 2016. Development of a multitissue microfluidic dynamic array for assessing changes in gene expression associated with channel catfish lctalurus punctatus appetite, growth, metabolism, and intestinal health. Aquaculture, 464:213-221.  

Small, B.C., Hardy, R.W. and C.S. Tucker. 2016. Enhancing fish performance in aquaculture.  Animal Frontiers, American Society of Animal Science, 6(4)42-49.

Sudheesh, P.S. and K.D. Cain.  2016. Optimization of a live attenuated Flavobacterium psychrophilium immersion vaccine.  Fish and Shellfish Immunology, 56:169-180.

Sudheesh, P.S., Zimmerman, J.K. and K.D. Cain.  2016.  Dietary effects on immunity, stress and efficacy of two live attentuated Flavobacterium psychrophilum vaccine formulations.  Aquaculture, (454)35-43.

Villasante, A., Powell, M.S., Murdoch, G.K. Overturf, K., Cain, K.D., Wacyk, J. and R.W. Hardy. 2016. Effects of anthocyanidins in myogenic differentiation in induced and non-induced primary myoblasts from rainbow trout, Oncorhynchus mykiss.  Comparative Biochemistry and Physiology, Part B:Biochemistry and Molecular Biology, 196:102-108.

Welker, T., Wan, X., Zhou, Y., Yang, Y., Overturf, K., Barrows, F. and K. Liu. Effect of dietary tea supplementation on growth performance, fat content, and muscle fatty acid and profile of rainbow trout (Oncorhynchus mykiss.)  Aquaculture International. Accepted. November, 2016.   

Abernathy, J., Devlin, R., Panserat, S., Welker, T. and K. Overturf.  2015.  Effort of long-term starvation on performance characteristics and metabolism-relatied gene responses in rainbow trout modified for increased growth-hormone production.  Marine Biotechnology, 17:753.767.

Campbell, N.R., Harmon, S.A. and S.R. Narum.  2015.  Genotyping-in-thousands by sequencing (GT-seq):A cost effective SNP genotyping method based on custom amplicon sequencing.  Molecular Ecology Resources, 15:855-867.  doi:10.1111/1755-0998.12357.
 
Candy, J.R., Campbell, N.R., Grinnell, M.H.,  Beacham, T.D., Larson, W.A., and S.R. Narum.  2015.  Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleithys pacificus, Omeridae) an anadromous smelt.   Moleular Ecology Resources, 15:1421-1434.  doi:10.1111/1755-0998.12400.  
 
Chen, Z., Snow, M., Lawrence, C.S., Church, A.R., Narum, S.R., Devlin, R.H., and A.P. Ferrell. 2015. Selection for upper thermal tolerance in rainbow trout. Journal of Experimental Biology, 218(3):803-81

Garner, B.A., Hand, B.K., Amish, S.J., Bernatchez, L., Foster, J.T., Miller, K.M., Morin, P.A., Narum, S.R., O'Brien, S.J., Roffler, G., Templin, W.D., Sunnucks, P., Strait., J., Warheit, K.I., Seamons, T.R., Wenburg. J., Olson., J. and G. Luikart.  2015.  Genomics in conservation:Case studies and bridging the gap between data and application.  Trends in Ecology and Evolution, doi/10.1016/j.tree.2015.10.009.
 
Garvin, M.R., Thorgaard, G.H. and S.R. Narum.  2015.  Differential expression of genes that control respiration contribute to thermal adaptation in redband trout (Oncorhynchus mykiss gairdneri).  Genome Biology and Evolution, 7:1404-1414.
 
Ghosh, B., Bridle, A.R., Nowak, B.F. and K.D. Cain.  2015.  Assessment of immune response and protection against bacterial coldwater disease induced by a live-attenuated vaccine delivered orally or intraperitoneally to rainboow trout, (Oncorhynthus mykiss )(Walbaum).  Aquaculture, 446:242-249.  
 
Gliniewicz, K, Wildung, M., Orfe, L.H., Wiens, G.D, Cain, K.D., Lahmers, K.K., Snevik, K.R., and D.R. Call.  2015.  Potential Mechanisms of attenuation for rifampicin-passaged strains of Flavobacterium psychrophilium.  BMC Microbiolgy. Sept.26:15:179 doi:10.1186s/ 12866-015-D518-1.  

Hardy, R.W. and H. Rogers.  2015. Biography -- Professor Ronald John Roberts.  Journal of Fish Diseases, dio:10.1111/jfd.12391.  

Hardy, R.W., Overturf, K. and A. Andreas.  2015.  Breaking the 20% soy barrier in fish feed.  Global Aquaculture Alliance, Pp. 20-22.

Hecht, B.C, Matala, A.P., Hess, J.E., and S.R. Narum.  2015.  Environmental adaptation in Chinook salmon (Oncorhynchus tshawytscha) throughout their North American range.  Molecular Ecology, 24:5573-5595. doi.10.1111/mec.13409.

Hernandez, C., Hardy, R.W., Marquez-Martinez, D.G., Dominguez-Jimenez, D. and B. Gonzalez-Rodriguez.  2015.  Evaluation of apparent digestibility coefficients of individual feed ingredients in spotted rose snapper, Lutjanus guttatus, (Steindachner, 1869).  Aquaculture Nutrition 21, 835-842. 
 
Long, A., Call, D.R., and K.D. Cain.  2015.  Comparison of quantitative PCR and ELISA for detection and quantification of Flavobacterium psychrophilum in salmonid broodstock.  Diseases of Aquatic Organisms, 115:129-146.  

Makesh, M., Sudheesh, S.S. and K.D. Cain. 2015. Systemic and mucosal immune response of rainbow trout to immunization with an attenuated Flavobacterium psychrophrophilum vaccine strain by different routes.  Fish and Shellfish Immunology, 44:156-163.  

Narum, S.R. and N.R. Campbell.  2015.  Transcriptomic response to heat stress among ecologically divergent populations of redband trout.  BMC Genomics 16:103-116.  doi 10.1186-s12864-015-1246-5.  

Narum, S.R., Vines, T. and J. Gow.  2015.  Editorial.  Molecular Ecology Resources, 15:1-7, doi:10.1111/1755-0998.12348.

Pena, E., Hernandez, C., Alvarez-Gonzalez, C.A., Ibara-Castro, L., Puello-Cruz, A. and R.W. Hardy.  2015.  Comparative characterization ofr protease activity in cultured spotted rose snapper juveniles, (Lutjanus guttatus.)  Lat Amer. J. Aquatic Res. dio: 10.3856/vol 43.

Schubiger, R.B., Orfe, L.H., Ponnersassery, S.P., Cain, D.K., Shah, D.H., and D.R. Call. 2015. Entericidin is requesite for a probiotic treatment (Enterobacter C6-6) to protect trout from coldwater disease challenge. Applied and Environmental Microbiology, 81:658-665. 
 
Thornton, E., Hardy, R.W. and T.P. Quinn.  2015.  Experimental determination of the limits of using stable isotypes to distinguish steelhead and rainbow trout offspring.  North American Journal of Fisheries Management, 35:4, 810-817.  

Villasante, A., Patro, B., Chew, B. Brezas, A., Becerra, M., Wacyk, J., Overturf, K., Powell, M. and R.W. Hardy.  2015.  Dietary intake of purple corn extract reduces adiposity and improves antiodidant capacity and n-3 FUFA profile in plasma of rainbow trout Oncorhynchus mykiss.  Journal of World Aquaculture, 46:381-394.

Villasante, A., Powell, M., Moutou, K.A., Murdoch, G.K., Overturf K., Wacyk, J. and R.W. Hardy.  2015.  Effects of anthocyanidins in myogenic differentiation and antioxidant defense inprimary myogenic cells isolated from rainbow trout (Oncorhynchus mykiss).    Aquaculture, 454-81-89.  

Villasante, A., Powell, M., Murdoch, G.K., Overturf, K., Cain, K.D., Wacyk, J. and R.W. Hardy.  Effects of Anthocyancyalidins in myogenic differentiation in induced and non-induced microblasts from rainbow trout Oncorhynchus mykiss.  Comparative Biochemistry and Physiology, Part B, 195-196: 102-108.

Welker, T., Barrows, R., Overturf, K., Gaylord, G. and W. Sealey.  2016.  Optimizing zinc supplementation levels of rainbow trout Oncorhynchus mykiss fed fishmeal-and plant-based diets.  Aquaculture nutrition doi:10.1111.anu.12232.  

Ashton, N.K., Anders, P.J. and K.D. Cain. 2014. Coded wire and passive integrated transponder implantations in juvenile burbot. North America Journal of Fisheries Management, 34(2)391-400.

Cain, K.D. and M.P. Polinski. 2014. Infectious Diseases of Coldwater Fish in Fresh Water. Chapter 3. In: Diseases and Disorders of Finfish in Cage Culture. Volume 2, (eds) Woo, P.T.K., and  D. W. Bruno. CABI publishing, New York, NY. pp. 60-113. 

Campbell, N.,R., LaPatra, S., Overturf, K., Towner, R. and S.R. Narum. 2014. Association of mapping disease resistance traits in rainbow trout using RAD sequencing. G3:Genes, genomes, genetics doi:10:10534/g3.114.014621.

Campbell, N.R., Harmon, S.A. and S.R. Narum. 2014. Genotyping-in-thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing. Molecular Ecology Resources, doi:10.1111/1755-0998.12357.

Devlin, R.H., Sakrani, D., White, S. and K. Overturf. 2014. Effects of domestication and growth harmone transgensis on mRNA profiles in rainbow trout, (Oncorhynchus mykiss). Journal of Animal Science, 91:5247-5258.

Egan, J.P., Johnson, R.D., Anders, P.J. and K.D. Cain. 2014. Initial characterization of embronic development in North American burbot Lota lota maculosa. Canadian Journal of Fisheries and Aquatic Sciences, 70(3):415-435.

Fehringer, T.R., Hardy, R.W. and K.D. Cain. 2014. Dietary inclusion of salmon testes meal from Alaskan seafood processing byproducts: Effects on growth and immune function on rainbow trout, Oncorhynchus mykiss (Walbaum), Aquaculture 433, 34-39.

Ghosh, B., Cain, K.D., Nowak, B.F. and A.R. Bridle.  2014.  Micoencapsulation of a putative probiotic enterobacter species, C6-6, to protect rainbow trout, Oncorhynchus mykiss (Walbaum), against bacterial coldwater disease.  Journal of Fish Diseases doi:10.1111/jfd.1231. 

Hernandez, C., Hardy, R.W., Conteras-Rajas, D., Lopez-Molina, B., Gonzalez-Rodriquez, B. and P. Domingez-Jiminez. 2014. Evaluation of tuna by-product meal as a protein source in feeds for juvenile spotted rose snapper, Lutjanus guttatus. Aquaculture nutrition, 20, 574-582.

Hernandez, C., Sanchez-Gutierrez, Y.,Hardy, R.W., Benintez-Hernandez, A., Dominguez-Jimenez, D., Gonzalez-Rodreguez, B., Osuna-Osuna, L. and O. Tortoledo. 2014. The potential of pet-grade poultry by-product meal to replace fish meal in the diet of the juvenile spotted rose snapper, Lutjanus guttatus (Steindachner, 1869). Aquaculture Nutrition 20, 623-631.

LaFrentz, B.R., LaPatra, S.E., Call,D.R. and K.D. Cain. 2014. Immunization of rainbow trout Oncorhynchus mykiss (Walbaum) with a crude lipopolysaccharide extract from Flavobacterium psychrophilum.  Journal of Fish Diseases, 45, 476-483.  

LaPatra, S.E., Fehringer, T.R. and K.D. Cain. 2014. A probiotic Enterbacter sp. provides significant protection against Flabacterium psychrophilum in rainbow trout (Oncorhynchus mykiss) after injection by two different routes. Aquaculture, 433, 361-366.  

Long, A., Call, D.R. and K.D. Cain.  2014. Investigation of the link between broodstock infection, vertical transmission, and prevalence of Flavobacterium psychrophilum, in eggs and progeny of rainbow trout and coho salmon.  Journal of Aquatic Animal Health, 26(2):66-77.   
 
Long, A., Fehringer, T.R., LaFrentz, B.R., Call, D.R. and K.D. Cain.  Development of a waterborne challenge model for Flavobacterium psychrophilum.  FEMS Microbiology Letters 359, 154-160.  

Plant, K.P., LaPatra, S.E., Call, D.R.  and K.D. Cain.  2014.  Attempts at validating a recombinant Flavobacterium psychrophilium gliding motility protein N as a vaccine candidate in rainbow trout, Oncorhynchus mykiss (Walbaum) against bacterial coldwater disease.   FEMS Microbiology Letters 358, 14-20. 

Wiens, G.D., LaPatra, S.E., Welch, J.J., Rexroad 3rd, C., Call, D.R., Cain, K.D., LaFrentz, B.R., Vaisvil, B., Schmitt, D.P. and V. Capatral.  2014.  Complete genome of Flavobacterium psychrophilum strain CSF259-93 used to select rainbow trout for increased genetic resistance against coldwater disease.  Genome Announcements 2(5):e00889-14.doi:10.1128/genomeA.00889-14.

Ashton, N.K., Ireland, S.C. and K.D. Cain. 2013. Artificial marker and subsequent tagging evaluations with juvenile burbot. Transactions of the American Fisheries Society, 142(6):1688-1698.

Barron, J. M., Jensen, N. R., Anders, P. J., Egan, Joshua P. and K.D. Cain. 2013. Suppression of cannibalism during larviculture of burbot (Lota lota maculosa) thru size grading. North American Journal of Aquaculture, 75(4):556:561.

Barron, J.M., Jensen, N.R., Anders, P.J., Egan, J.P., Ireland, S.C. and K.D. Cain. 2013. Effects of stocking density on survival and yield of North American burbot reared under semi intensive conditions. Transactions of the American Fisheries Society, 142(6):1680-1687.

Lee, K., Rahimnejad, S., Powell, M.S., Barrows, F.T., Smiley, S., Bechtel, P. and R.W. Hardy. 2013. Salmon testes meal as a functional feed additive in fish meal and plant protein-based diets for rainbow trout (Oncorhynchus mykiss Walbaum) and Nile tilapia (Oreochromis niloticus) fry. Aquaculture Research. Article first published online: 29 OCT 2013| DOI.10.1111/are.12313.

Long, A., Call, D.R. and K.D. Cain. Accepted. Investigation of the link between broodstock infection, vertical transmission, and prevalence of Flavobacterium psychrophilu, in eggs and progeny of rainbow trout and Coho salmon. Journal of Aquatic Animal Health.

Long, A., Fehringer, T.R., Swain, M.A., LaFrentz, B.R., Call, D.R. and K.D. Cain. 2013. Enhanced efficacy of an attenuated Flavobacterium psychrophilum strain cultured under iron-limited conditions. Fish and Shellfish Immunology, 35:1477-1482.

Moran, P., Teel, D.J., Banks, M.A., Beacham, T.D., Bellinger, M.R., Blankenship, S.M., Candy, J.R., Garza, J.C., Hess, J.E., Narum, S.R., Seeb, L.W., Wallace, C.G., and C.T. Smith. 2013. Divergent life-history races do not represent chinook salmon coast wide: the importance of scale in quaternary biogeography. Canadian Journal of Fisheries and Aquatic Sciences, 70(3):415-435.

Narum, S.R., Campbell, N.R., Meyer, K.A., Miller, M. and R. W. Hardy. 2013. Thermal adaptation and acclimation of ectotherms from differing aquatic climates. Molecular Ecology. Article first published on-line: DOI.10.1111/mec.12240.

Overturf, K., Barrows, F.T. and R.W. Hardy. 2013. Effect and interaction of rainbow trout strain (Oncorhynchus mykiss) and diet type on grown and nutrient retention. Aquaculture Research, 44(4):604-611.

Pritchard, V.L., Campbell, N.R., Narum, S.R., Peacock, M.M. and J.C. Garza. 2013. Discovery and characterization of novel genetic markers for use in the management of Lahontan cuttroat trout (Oncorhynchus clarkia henshaw). Molecular Ecology Resources, 13 (2):276-288.

Santin, A.E., Searle, A.J., Winston, V.D., Powell, M.S., Hardy, R.W. and K.J. Rodnick. 2013. Glycated hemoglobin is not an accurate indicator of glycemia in rainbow trout. Comparative Biochemistry and Physiology Part A.: Molecular and Integrative Physiology, 165 (3):343-352.

Sealy, W.M., Barrows, F.T., Smith C.E., Wacyk, J.M., Donawower, B.C., Powell, M.S. and R.W. Hardy. 2013. Heat shock protein regulation in rainbow trout, Oncorhynchus mykiss is altered by dietary soybean inclusion and antiposphyolispase A2 antibody. Journal of the World Aquaculture Society. Article first published online:24 OCT 2013| DOI/10.1111/jwas/2074.

Valdenegro-Vega, V.A., Crosbie, P., Vincent, B., Cain, K.D., and B.F. Nowak. 2013. Effect of immunization route on mucosal and systemic immune response in Atlantic salmon (Salmo salar). Veterinary Immunology and Immunopathology, 151(1-2):113-123.

Weigel, D.E., Connolly, P.J. and M.S. Powell. 2013. Fluvial rainbow trout contribute to the colonization of steelhead (Oncorhyncus mykiss) in a small stream. Environmental Biology of Fishes, Article first published on-line: 7 NOV 2013| DOI/10.1007/s10641-013-0204-9.

Weigel, D.E., Connolly, P.J., Martens, K. and M.S. Powell. 2013. Colonization of steelhead (Oncorhynchus mykiss) in a natal stream after barrier removal. Transactions of the American Fisheries Society, 142:920-930.

Weigel, D.E., Connolly, P.J. and M.S. Powell. 2013. The impact of small irrigation diversion dams on the recent migration rates of of steelhead and redband trout (Oncorhynchus mykiss). Conservation Genetics, 14(6),1255-1267.

Barron, J.M., Jensen, N.R., Anders, P.J., Egan, J.P., Ireland, S.C. and K.D. Cain. 2012. Effects of temperature on the intensive culture performance of larval and juvenile North American Burbot (Lota Lota maculosa). Aquaculture, 364-365, 67-73.

Burbank, D.R., LaPatra, S.E. Fornshell, G. and Cain, K.D. 2012. Isolation of bacterial probiotics candidates from the gastrointestinal (GI) tract of rainbow trout and screening for in vitro inhibitory activity to Flavobacterium psychrophilum. Journal of Fish Diseases, 35:11 809-81.

Burr, G.S., Wolters, W.R., Barrows, F.T., and R.W. Hardy. 2012. Replacing fishmeal with blends of alternative proteins on growth performance of rainbow trout (Oncorhynchus mykiss), and early or late stage juvenile Atlantic salmon (Salmo salar). Aquaculture doi.org/10.1016/j.aquaculture.2011.12.044.

Cain, K.D. and M.P. Polinski. Infectious Diseases of Coldwater Fish in Fresh Water. In: Diseases and Disorders of Finfish in Cage Culture. Volume 2, (eds) Woo, P.T.K. and Bruno, D.W. CABI Publishing, New York, NY.

Campbell, M.R., Kozfkay, C.C., Copeland, T., Schrader, W.C., Ackerman, M.W., and S.R. Narum. 2012. Estimating abundance and life history characteristics of threatened wild Snake River Steelhead stocks by using genetic stock identification. Transactions of the American Fisheries Society, 141:1310-1327.

Campbell, N.R., Amish, S.J., Pritchard, V.L., McKelvey, K.S., Young, M.K., Schwartz, M.K., Garza, J.C., Luikart, G., and S.R. Narum. 2012. Development and evaluation of 200 novel SNP assays for population genetic studies of westslope cuttroat trout and genetic identification of related taxa. Molecular Ecology Resources, 12:942-949.

Foltz, J.R., Jensen, N.R., Polinski, M.P., Ireland, S.C. and K.D. Cain. 2012. Characterization of egg development by catheterization and consequences for delaying egg fertilization in hatchery reared burbot (Lota lota). North American Journal of Aquaculture, 74 (3) :408-412.

Gliniewicz, K., Plant, K.P., LaPatra, S.E., LaFrentz, B.R., Cain, K.D., Snekvik, K.R. and D.R. Call. 2012. Comparative proteomic analysis of virulent and rifampicin attenuated Flavobacterium psychrophilium. Journal of Fish Diseases, 35 (7):529-39.

Hardy, R.W. 2012. John Emil Halver, 1922-2002. World Aquaculture, 43 (4) 10-11.

Hardy, R.W. 2012. The Nutritional Pathology of Teleosts. In: Fish Pathology, Fourth Edition, R.J. Roberts (editor). W.B. Saunders, London. Pp. 402-424.

Hecht, B.C., Campbell, N.R., Holecek, D.E. and S.R. Narum. 2012. Genome-wide assocation reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout. Molecular Ecology, 22 (11): 3061-3076.

Hess, J.E., Campbell, N.R., Close, D.A., Docker, M.F. and S.R. Narum. 2012. Population genomics of Pacific lamprey:adaptive variation in a highly dispersive species. Molecular Ecology, 22:2898-2916.

Hess, M.A., Rabe, C.D., Vogel, J.L., Stephenson, J.J., Nelson, D.D. and S.R. Narum. 2012. Supportive breeding boosts natural popoulation abundance with minimal negative impacts on fitness of a wild population of chinook salmon. Molecular Ecology doi:10.1111/mec.12046.

LaFrentz, B.R., LaPatra, S.E., Call, D.R. and K.D. Cain. 2012. Immunization of rainbrow trout (Oncorhynchus mykiss) (Walbaum) with a crude lipopolysaccharide extract from Flavobacterium psychrophilum. Aquaculture Research. Article first published on-line:2 AUG 2012 | DOI.1111 /j.1365-2109.2012.03249.x.

Long, A., Polinski, M.P., Call, D.R. and K.D. Cain. 2012. Validation of diagnostic assays to screen broodstock for Flavobacterium psychrophilum infections. Journal of Fish Diseases, 35:407-419.

Matala, A.P., Young, W., Vogel, J.L. and S.R. Narum. 2012. Influences of hatchery supplementation, spawner distribution, and habitat on genetic structure of chinook salmon in the South Fork Salmon River, Idaho. North American Journal of Fisheries Management, 32:346-359.

Narum, S.R., Campbell, N.R., Meyer, K.A., Miller, M.R., and R.W. Hardy. Thermal adaptation and acclimation of ectotherms from differing aquatic climates. Molecular Ecology. doi:10.111/mec.12240.

Polinski, M.P., Jensen, N.R., Foltz, J.R., Ireland, S.C. and K.D. Cain. Hydrogen peroxide treatments administered to hatchery reared burbot (Lota lota):assessing treatment regimes from embronic development through juvenile rearing. North American Journal of Aquaculture, 75(1) : 50-56.

Snyder, G.S., Gaylord, T.G., Barrows., F.T., Overturf, K., Cain, K.D., Hill, R., and R.W. Hardy. 2012. Effects of carnosine supplementation to an all-plant protein diet for rainbow trout (Oncorhynchus mykiss). Aquaculture, 338-341, 72-81.

Venold, F., Penn, M., Krogdahl, A. and K. Overturf. 2012. Severity of soybean meal induced distal intestinal inflammation, enterocyte proliferation rate, and fatty acid binding protein (Fabp2) level differ between strains of rainbow trout (Oncorhynchus mykiss). Aquaculture, 365:281-292.

Wacyk, J., Powell, M., Rodnick, K., Overturf, K., Hill, R., and R.W. Hardy. 2012. Dietary protein source significantly alters growth performance, plasma variables, and hepatic gene expression in rainbow trout (Oncorhynchus mykiss) fed amino acid balanced diets. Aquaculture, 356-357, 223-234.

Anders, P., Drauch-Shreier, A., May, B., Rodzen, J., Powell, M. and S. Narum. 2011. A review of genetic evaluation tools for conservation and management of sturgeons: Roles, benefits and limitations. Journal of Applied Ichthyology, 27 (2)3:11.

Burbank, D.R., Shah, D.H., LaPatra, S.E., Fornshell, G. and K.D. Cain. 2011. Enhanced resistance to coldwater disease following feeding of probiotic bacterial strains to rainbow trout (Oncorhynchus mykiss). Aquaculture 321, (3-4):185-190.

Campbell, M.R., Kozfkay, C.M., Meyer, K.A., Powell, M.S. and R.N. Williams. 2011. Historical influences of volcanism and glaciation in shaping mitochondrial DNA variation and distribution in Yellowston cutthroat trout (Oncorhynchus clarki) bouveria across its native range. Transactions of the American Fisheries Society, 140 (1)91-107.

Colt, J., Momoda, T., Chitwood, R., Fornshell, G., and C. Schreck. 2011. Water quality in tilapia transport: from the farm to the retail store. North American Journal of Aquaculture, 73(4):426-434.

Hernandez, C., Olvera-Novoa, M.A., Smith, D.A., Hardy R.W., and B. Gonzalez-Rodriguez. Enhancement of shrimp Litopenaeus vannamei diets based on terrestrial protein sources via the inclusion of tuna by-product protein hydrolysates. Aquaculture, 317:117-123.

Jensen, N.R., Anders, P.J., Hoffman, C.A., Porter, L.S., Ireland, C. and K. D. Cain. 2011. Performance and macronutrient composition of age 0 burbot (Lota lota) fed four diet treatments. North American Journal of Aquaculture, 73:360-368.

LaFrentz, B.R., LaPatra, S.E., Call, D.R., Wiens, G.D., and K.D. Cain. 2011. Identification of immunogenic proteins within distinct molecular mass fractions of Flavobacterium psychrophilum. Journal of Fish Diseases, 34:823-830.

Lloyd, S.J., LaPatra, S.E., Snekvik, K.R., Cain, K.D., and D.R. Call. 2011. Quantitative PCR demonstrates a positive correlation between a Rickettsia-like organism and severity of strawberry disease lesions in rainbow trout (Oncorhynchus mykiss), Journal of Fish Diseases 34:701-709.

Neufeld, M.D., Cain, K.D., Jensen, N.R., Ireland, S.C. and V.L. Paragamian. 2011. Movement of lake-origin burbot reared in a hatchery environment and released into a large river drainage. North American Journal of Fisheries Management, 31:56-62.

Neufeld, M.D., Cain, K.D., Jensen, N.R., Ireland, S.C., Lewandowski. 2011. Evaluation of methods for collection and vertilization of burbot eggs from a wild stock for conservation aquaculture operations. Journal of Applied Ichthyology, 27:9-15.

Overturf, K., Vallejo, R., Palti, Y., Barrows, F.T., and J.E. Parson. 2011. Microarray analysis of differential utilization of plant-based diets by rainbow trout. Aquaculture International published online.

Paramagian, V.L., Laude, C., Cain, K.D., Barron, J.M. and N.R. Jensen. 2011. A novel experiment of rearing burbot larvae in cages, Journal of Applied Ichthyology, 27 (suppl1):16-21.

Plant, K.P., LaPatra, S.E., Call, D.R., and K.D. Cain. 2011. Immunization of rainbow trout (Oncorhynchus mykiss) with Flavobacterium psychrophilum proteins elongation factor-Tu, SufB Fe-S assembly protein and ATP snythaseB, Journal of Fish Diseases 34:247-250.

Sealey, W.M., Hardy, R.W., Barrows, F.T., Pan, Q. and D.A.J. Stone. Evaluation of 100% fish meal substitutes with chicken concentrate, poultry protein by-product blend, and chicken and egg concentrate on growth and disease resistance of juvenile rainbow trout Oncorhynchus mykiss fed plant-based diets. Journal of the World Aquaculture Society, 42:46-55.

Tlusty, M.F., Hardy, R.W. and S.F. Cross. 2011. Limiting size of fish fillets at the center of the plate improves the sustainability of aquaculture production, Sustainability 3:957-964.

Torrisen, O., Olson, R.E., Toresen, R., Hemre, G.I., Tacon, A.G.J., Asche, F., Hardy, R.W. and S. Lall. 2011. Atlantic salmon (Salmo salar):The "superchicken of the sea"? Reviews in Fisheries Science, 19 (3) : 257-278.

Benner, M.J., Drew, R.E., Hardy, R.W. and B.D. Robison. 2010. Zebrafish (Danio rerio) vary by strain and sex in their behavioral and transcriptional responses to selenium supplementation. Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology, Part A, 157:310-318. doi.10.1016./j.cbpa.2010.07.016.

Hardy, R.W. 2010. Utilization of plant proteins in fish diets: effects of global demand and supplies of fishmeal. Aquaculture Research, 41:770-776.

Hardy, R.W., Moller, G. and L. Oram. 2010. Effects of dietary selenomethionine on cutthroat trout (Oncorhynchus clarki bouvieri) growth and reproductive performance over a life-cycle. Archives of Environmental Contamination and Toxicology, 58:237-245.

Lee, K-J, Powell, M., Barrows, F.T., Smiley, S., Bechtel, P. and R.W. Hardy. 2010. Evaluation of supplementation fish bone meal made from Alaska seafood processing byproducts and dicalcium phosphate in plant protein based diets for rainbow trout (Oncorhynchus mykiss). Aquaculture, 302:248-255.

Narum, S.R., Hess, J.E. and A.P. Matala. 2010. Examing genetic lineages of Chinook salmon in the Columbia River Basin. Transactions of the American Fisheries Society, 139:1465-1477.

Narum, S.R. and N.R. Campbell. 2010. Sequence divergence of heat shock genes within and among three Oncorhynchids. Journal of Heredity, 101:107-112.

Narum, S.R., N.R. Campbell, Kozfkay, C C. and K.A. Meyer. 2010. Adaptation of redband trout in desert and montane environments. Molecular Ecology, 19:4622-4637.

Overturf, K.S., LaPatra, R., Towner, R., Campbell, N. and S.R. Narum. 2010. Relationships between growth and disease resistance in rainbow trout, (Oncorhynchus mykiss)(Walbuam). Journal of Fish Diseases, 33:321-329.

Overturf, K.S., Sakrani, D. and R. Devin. 2010. Expression profile for metabolic and growth-related genes in domesticated and transgenic coho salmon (Oncorhynchus kisutch) modified for increased grown hormone production. Aquaculture, 307:111-122.

Polinski, M.P., Fehringer, T.R., Johnson, K.A., Snekvik, K.R., LaPatra, S.E., LaFrentz, B.R., Ireland, S.C. and K.D. Cain. 2010. Characterization of susceptibility and carrier status of burbot to IHNV, IPNV, Flavobacterium psychorophilum, Aeromonas salmonicida, and Renibacterium salmoninarum. Journal of Fish Diseases 33:559-570.

Polinski, M.P., Jensen, N.R., Johnson, K.A., Cain, K.D. and S.C. Ireland. 2010a. Assessment of formalin and hydrogen peroxide use during egg incubation of North Ameerican burbot. North American Journal of Aquaculture 72: 111-117.

Poloinski, M.P., Drennan, J.D., Batts, W.N., Ireland, S.C. and K.D. Cain. Establishment of a cell line from burbot (Lota lota) with Characterization of susceptibility to INHV, Iand VSHV. Diseases of Aquatic Organisms. 90:15-23.

Powell, M., Hardy, R.W., Flagg, T.A., and P.A. Kline. 2010. Proximate composition and fatty acid differences in hatchery-reared and wild Snake River sockeye salmon overwintering in nursery lakes. North American Journal of Fisheries Management 39, 530-537.

Stone, D.A.J., Oliveira, A.C.M., Plante, S., Smiley, S., Bechtel, P. and R.W. Hardy. 2010. Enhancing highly unsaturated w-3 fatty acids in phase-fed rainbow trout (Oncorhynchus mykiss) using Alaskan fish oils. Aquaculture Nutrition (published on-line 14, Sep 2010, DOI:10.1111/j.1365-2095.2010.00790.x.)

Stone, D.A.J., Oliveira, A.C.M., Ross, C.F., Plante, S., Smiley, S., Bechtel, P. and R.W. Hardy. 2010. The effects of phase-feeding rainbow trout (Oncorhynchus mykiss) canola oil and Alaskan pollock oil on fillet fatty acid composition and sensory attributes. Aquaculture Nutrition (published on-line 14, Sep 2010, DOI:10.1111/j.1365)

Campbell, N.R. and S.R. Narum. 2009. Characterization of 22 novel single nuleotide polymorphism markers in steelhead and rainbow trout. Molecular Ecology Resources 9:318-322.

Campbell, N.R. and S.R. Narum. 2009. Quantitative PCR assessment of microsatellite and SNP genotyping with variable quality DNA extracts. Conservation Genetics 10:779-784.

Campbell, N.R. and S.R. Narum. 2009. Identification and heat characterization of heat shock response related single nucleotide polymorphisms in O. mykiss and O. tschawtscha. Molecular Ecology Resources 9:1460-1559.

Chapalamadugu, K.C., Robison, B.D., Drew, R.E., Powell, M.S., Hill, R.A., Amberg, J.J., Rodnick, K.J., Hardy, R.W., Hill, M.L., and G.K. Murdoch. 2009. Dietary carbohydrate level affects transcription factor exxpression that regulates skeletal muscle myogensis in rainbow trout. Comparative Biochemistry and Physiology, Part B: Biochemistry and Molecular Biology 153, 66-72.

Church, M.R., Ebersole, J.L., Rensmeyer, K.M., Couture, R.B., Barrows, F.T. and D.L.G. Noakes. 2009. Mucus: a new tissue fraction for rapid determination of fish diet switching using stable isotope analysis. Canadian Journal of Fisheries and Aquatic Sciences 66:1-5.

Foltz, J., Plant, K., Overturf, K., Clemens, K. and M. Powell. 2009. Detection of Neucloespora salmonis in steelhead, Oncorhynchus mykiss (Walbaum), using quantitative polymerase chain reaction (qPCR). Journal of Fish Diseases, 32:551-555.

Gaylord, T.G. and F.T. Barrows. 2009. Multiple amino acid supplementations to reduce dietary protein in plant-based rainbow trout (Oncorhynchus mykiss) feeds. Aquaculture. 287:180-198.

Gaylord, T.G., Barrows, F.T. and S.D. Rawles. 2009. Apparent amino acid availability from feedstuffs in extruded diets for rainbow trout Oncorhynchus mykiss. Aquaculture Nutrition. doi:10.1111/j.1365-2095.2009./00678.x.Log#235637.

Gaylord, T.G., Barrows, F.T., Rawles, S.D., Liu, K., Bregitzer, P., Hang, A., Obert, D. and C. Morris. 2009. Apparent digestibility of nutrients in extruded diets from cultivars of barley and wheat selected for nutritional quality in rainbow trout (Oncorhynchus mykiss). Aquaculture Nutrition 15:306-312.

Hardy, R.W. and J. Wacyk. 2009. Research thrusts in nutritional genomics of rainbow trout. Bulletin of the Aquaculture Association of Canada, 107-3:11-20.

Hernandez, C., Olvera-Novoa, M.A., Hardy, R.W., Hermosillo, A. and B. Gonzalez. 2009. Complete replacement of fish meal by porcine and poultry by-product meals in practical diets for Nile tilapia Oreochromis niloticus: digestibility and growth performance. Aquaculture Nutrition (DOI:;10.1111/j.1365-2095.2008.00639.x,published on-line in advance of print.)

Jensen, N.R. and K. D. Cain. 2009. Burbot--Not just another cod. Hatchery International. Volume 10, Issue 3, Pages 1, 14 and 15.

Kindschi, G.A., Myrick, C.A., Barrows, F.T., Toner, M. and W.C. Fraser. 2009. Performance of Yellowstone and Snake River cutthroat trout fry fed seven different diets. North American Journal of Aquaculture 71:325-329.

Liu, K.S., Barrows, F.T., and D. Obert. 2009. Dry fractionation methods to produce barley meals varying in protein, beta-glucan and starch contents. J. Food Sci. Published On-line: June, 30, 2009 12:12PM, 10.1111/j.1750-3841.2009.01240.

Narum, S.R., and N.R. Campbell. 2009. Sequence divergence of heat shock genes within and among three Oncorhynchids. Journal of Heredity doi:10.1093/jhered/esp081.

Naylor, R., Hardy, R.W., Bureau, D., Chiu, A., Elliott, M., Farrell, A., Forster, I., Gatlin, D., Goldberg, R., Hua, K. and P. Nichols. 2009. Feeding Aquaculture in an era of finite resources. Proceedings of the National Academy of Sciences, 106 (36): 15103-15510.

Overturf, K. and T.G. Gaylord. 2009. Determination of relative protein degradation activity at different life stages in rainbow trout (Oncorhynchus mykiss). Comparative Biochemistry and Physiology Part B. 152:150-160.

Overturf, K. and R.W. Hardy. 2009. US scientists to develop standard genetic stock of rainbow trout for research studies. Hatchery International 10:21.

Overturf, K., LaPatra, S., Towner, R., Campbell, N. and S. R. Narum. 2009. Relationships between growth and disease resistance in rainbow trout (Oncorhynchus mksiss). Journal of Fish Diseases. DOI: 10.1111/j.1365-2761. 2009.01124x.

Sealey, W., Barrows, F.T., Casten, M. and R.W. Hardy. 2009. Dietary protein source and level affects growth in neon tetras. North American Journal of Aquaculture 71, 320-324.

Sealey, W., Barrows, F.T., Smith, C., Overturf, K., and S. LaPatra. 2009. Soybean meal level and probiotics in first feeding fry diets alter the ability of rainbow trout Oncorhynchus mykiss to utilize high levels of soybean meal during grow-out. Aquaculture 293:195-203.

Stephenson, J.J., Campbell, M.R., Hess, J.E., Kozfkay, C., Matala, A.P., McPhee, M.V., Moran, P., Narum, S.R., Paquin, M.M., Schlei, O., Small, M.P., Van Doornik, D.M. and K. Wenburg. 2009. A centralized model for creating shared, standardized, microsatellite data that simplifies inter-laboratory collaboration. Conservation Genetics 10:1145-1149.

Wolters, W.R., Barrows, F.T., Burr, G.S. and R.W. Hardy. 2009. Growth parameters of wild and selected strains of Atlantic salmon, (Salmo salar), on two experimental diets. Aquaculture 297,136-140.

Jensen, N.R., Ireland, S.C., Siple, J.T., Williams, S.R. and K.D. Cain. 2008a. Evaluation of egg incubation methods and larval feeding regimes for North American burbot. North American Journal of Aquaculture. 70:162-170.

Jensen, N.R., Zuccarelli, M.D., Patton, S.J., Williams, S.R., Ireland, S.C. and K.D. Cain. 2008b. Cryopresertation and methanol effects on burbot sperm motility and egg fertilization. North American Journal of Aquaculture. 70:38-42.

Jensen, N.R., Williams, S.R., Ireland, S.C., Siple, J.T., Neufeld, M.D. and K.D. Cain. 208c. Preliminary capitve burbot spawning observations. In: Paragamian, J.L., Bennett, D.H., editors. Burbot: Ecology managements and culture. Bethesda: American Fisheries Society. 155-66.

Zuccarelli, M.D., Jensen, N. and R.L. Ingermann. 2007. Inhibitory effort of osmotic concentration, potassium and pH on motility of the sperm of the North American burrbot (Lota lota maculosa). Journal of Fish Biology 70:178-189.

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