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Aquaculture Research Institute
 
2012 Newsletter
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Hagerman

Hagerman Fish Culture Experiment Station
3059 Natl Fish Hatchery Rd # F Hagerman, ID 83332
(208) 837-9096
aqua@uidaho.edu

ARI - Moscow, ID

Aquaculture Research Institute
(208) 885-5830
aqua@uidaho.edu

Aquaculture Reports & Publications

ARI Newsletter Summer 2012
Guppies and Plants Find Harmony at Potlatch Elementary School, Potlatch, Idaho, USA ....
» Download Newsletter

2013

Moran, P., Teel, D.J., Banks, M.A., Beacham, T.D., Bellinger, M.R., Blankenship, S.M., Candy, J.R., Garza, J.C., Hess, J.E., Narum, S.R., Seeb, L.W., Wallace, C.G., and C.T. Smith.  2013.  Divergent life-history races do not represent chinook salmon coast wide: the importance of scale in quaternary biogeography.  Canadian Journal of Fisheries and Aquatic Sciences, 70(3):415-435. 
Narum, S.R., Campbell, N.R., Meyer, K.A., Miller, M. and R. W. Hardy.   2013.  Thermal adaptation and acclimation of ectotherms from differing aquatic climates.  Molecular Ecology doi.10.1111/mec.12240.
Pritchard, V.L., Campbell, N.R., Narum, S.R., Peacock, M.M. and J.C. Garza.  2013.  Discovery and characterization of novel genetic markers for use in the management of Lahontan cuttroat trout (Oncorhynchus clarkia henshaw).  Molecular Ecology Resources, 13 (2):276-288.     
Valdenegro-Vega, V.A., Crosbie, P., Vincent, B., Cain, K.D., and B.F. Nowak. 2013. Effect of immunization route on mucosal and systemic immune response in Atlantic salmon (Salmo salar).  Veterinary Immunology and Immunopathology, 151(1-2):113-123.   

2012

Barron, J.M., Jensen, N.R., Anders, P.J., Egan, J.P., Ireland, S.C. and K.D. Cain.  2012.  Effects of temperature on the intensive culture performance of larval and juvenile North American Burbot (Lota Lota maculosa).  Aquaculture, 364-365, 67-73. 
Burbank, D.R., LaPatra, S.E. Fornshell, G. and Cain, K.D. 2012.  Isolation of bacterial probiotics candidates from the gastrointestinal (GI) tract of rainbow trout and screening for in vitro inhibitory activity to Flavobacterium psychrophilum.  Journal of Fish Diseases, 35:11 809-81 
Burr, G.S., Wolters, W.R., Barrows, F.T., and R.W. Hardy.  2012.  Replacing fishmeal with blends of alternative proteins on growth performance of rainbow trout (Oncorhynchus mykiss), and early or late stage juvenile Atlantic salmon (Salmo salar).  Aquaculture doi.org/10.1016/j.aquaculture.2011.12.044. 
Campbell, M.R.,  Kozfkay, C.C., Copeland, T., Schrader, W.C., Ackerman, M.W., and S.R. Narum.  2012.  Estimating abundance and life history characteristics of threatened wild Snake River Steelhead stocks by using genetic stock identification.  Transactions of the American Fisheries Society, 141:1310-1327. 
Campbell, N.R., Amish, S.J., Pritchard, V.L., McKelvey, K.S., Young, M.K., Schwartz,  M.K., Garza, J.C., Luikart, G., and S.R. Narum.  2012.  Development and evaluation of 200 novel SNP assays for population genetic studies of westslope cuttroat trout and genetic identification of related taxa.  Molecular Ecology Resources, 12:942-949.   
Foltz, J.R., Jensen, N.R., Polinski, M.P., Ireland, S.C. and K.D. Cain.  2012.  Characterization of egg development by catheterization and consequences for delaying egg fertilization in hatchery reared burbot (Lota lota).  North American Journal of Aquaculture, 74:3 408-412.
Gliniewicz, K., Plant, K.P., LaPatra, S.E., LaFrentz, B.R., Cain, K.D., Snekvik, K.R. and D.R. Call.  2012.  Comparative proteomic analysis of virulent and rifampicin attenuated Flavobacterium psychrophilium.  Journal of Fish Diseases, 35 (7):529-39. 
Hardy, R.W. 2012. John Emil Halver, 1922-2002.  World Aquaculture, 43 (4) 10-11. 
Hardy, R.W. 2012. The Nutritional Pathology of Teleosts. In: Fish Pathology, Fourth Edition, R.J. Roberts (editor). W.B. Saunders, London. Pp. 402-424. 
Hecht, B.C., Campbell, N.R., Holecek, D.E. and S.R. Narum.  2012.  Genome-wide assocation reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout.  Molecular Ecology doi:10.1111.mec.12082.   
Hess, J.E., Campbell, N.R., Close, D.A., Docker, M.F. and S.R. Narum.  2012.  Population genomics of Pacific lamprey:adaptive variation in a highly dispersive species.  Molecular Ecology doi:10.1111/mec.12150. 
Hess, M.A., Rabe, C.D., Vogel, J.L., Stephenson, J.J., Nelson, D.D. and S.R. Narum.  2012.  Supportive breeding boosts natural popoulation abundance with minimal negative impacts on fitness of a wild population of chinook salmon.  Molecular Ecology doi:10.1111/mec.12046. 
LaFrentz, B.R., LaPatra, S.E., Call, D.R. and K.D. Cain.   2012.  Immunization of rainbrow trout (Oncorhynchus mykiss) (Walbaum) with a crude lipopolysaccharide extract from Flavobacterium psychrophilum.  Aquaculture Research, 1-8.
Long, A., Polinski, M.P., Call, D.R. and K.D. Cain.  2012.  Validation of diagnostic assays to screen broodstock for Flavobacterium psychrophilum infections.  Journal of Fish Diseases, 35:407-419. 
Matala, A.P., Young, W., Vogel, J.L. and S.R. Narum.  2012.  Influences of hatchery supplementation, spawner distribution, and habitat on genetic structure of chinook salmon in the South Fork Salmon River, Idaho.  North American Journal of Fisheries Management, 32:346-359.   
Narum, S.R., Campbell, N.R., Meyer, K.A., Miller, M.R., and R.W. Hardy. Thermal adaptation and acclimation of ectotherms from differing aquatic climates.  Molecular Ecology.   doi:10.111/mec.12240. 
Overturf, K., Barrows, F.T., and R.W. Hardy.  Effect and Interaction of rainbow trout strain (Oncorhynchus mykiss) and diet type on growth and nutrient retention.  Aquaculture Research doi:10:111/j.1365-2109.2011.03065.x.2012. 
Polinski, M.P., Jensen, N.R., Foltz, J.R., Ireland, S.C. and K.D. Cain.  Hydrogen peroxide treatments administered to hatchery reared burbot (Lota lota):assessing treatment regimes from embronic development through juvenile rearing.  North American Journal of Aquaculture, 75:1 50-56. 
Snyder, G.S., Gaylord, T.G., Barrows., F.T., Overturf, K., Cain, K.D., Hill, R., and R.W. Hardy.  2012.  Effects of carnosine supplementation to an all-plant protein diet for rainbow trout (Oncorhynchus mykiss).  Aquaculture, 338-341, 72-81.   
Venold, F., Penn, M., Krogdahl, A. and K. Overturf.  2012.  Severity of soybean meal induced distal intestinal inflammation, enterocyte proliferation rate, and fatty acid binding protein (Fabp2) level differ between strains of rainbow trout (Oncorhynchus mykiss).  Aquaculture, 365:281-292.   
Wacyk, J., Powell, M., Rodnick, K., Overturf, K., Hill, R., and R.W. Hardy.  2012.  Dietary protein source significantly alters growth performance, plasma variables, and hepatic gene expression in rainbow trout (Oncorhynchus mykiss) fed amino acid balanced diets.   Aquaculture, 356-357, 223-234.

2011

Burbank, D.R., Shah, D.H., LaPatra, S.E., Fornshell, G. and K.D. Cain.  2011.  Enhanced resistance to coldwater disease following feeding of probiotic bacterial strains to rainbow trout (Oncorhynchus mykiss). Aquaculture 321 (3-4):185-190.
Colt, J., Momoda, T., Chitwood, R., Fornshell, G., and C. Schreck.  2011.  Water quality in tilapia transport: from the farm to the retail store.  North American Journal of Aquaculture 73(4):426-434.
Jensen, N.R.,  Anders, P.J., Hoffman, C.A.,  Porter, L.S., Ireland, C. and K. D. Cain. 2011. Performance and macronutrient composition of age 0 burbot (Lota lota) fed four diet treatments. North American Journal of Aquaculture 73:360-368.
LaFrentz, B.R., LaPatra, S.E., Call, D.R., Wiens, G.D., and K.D. Cain.  2011.  Identification of immunogenic proteins within distinct molecular mass fractions of Flavobacterium psychrophilum.  Journal of Fish Diseases 34:823-830.   
Lloyd, S.J., LaPatra, S.E., Snekvik, K.R., Cain, K.D., and D.R. Call.  2011.  Quantitative PCR demonstrates a positive correlation between a Rickettsia-like organism and severity of strawberry disease lesions in rainbow trout (Oncorhynchus mykiss).  Journal of Fish Diseases 34:701-709. 
Neufeld, M.D., Cain, K.D., Jensen, N.R., Ireland, S.C. and V.L. Paragamian.  2011. Movement of lake-origin burbot reared in a hatchery environment and released into a large river drainage.  North American Journal of Fisheries Management 31:56-62.
Neufeld, M.D., Cain, K.D., Jensen, N.R., Ireland, S.C., Lewandowski.  2011. Evaluation of methods for collection and vertilization of burbot eggs from a wild stock for conservation aquaculture operations.  Journal of Applied Ichthyology 27:9-15. 
Overturf, K., Vallejo, R., Palti, Y., Barrows, F.T., and J.E. Parson.  2011.  Microarray analysis of differential utilization of plant-based diets by rainbow trout.  Aquaculture International published online http://www.springerlink.com/content/163755m884005646/fulltext.pdf.
Paramagian, V.L., Laude, C., Cain, K.D., Barron, J.M. and N.R. Jensen.  2011.  A novel experiment of rearing burbot larvae in cages.  Journal of Applied Ichthyology. 
Plant, K.P., LaPatra, S.E., Call, D.R., and K.D. Cain.  2011.  Immunization of rainbow trout (Oncorhynchus mykiss) with Flavobacterium psychrophilum proteins elongation factor-Tu, SufB Fe-S assembly protein and ATP snythaseB.  Journal of Fish Diseases 34:247-250.   

2010

Benner, M.J., Drew, R.E., Hardy, R.W. and B.D. Robison.  2010.  Zebrafish (Danio rerio) vary by strain and sex in their behavioral and transcriptional responses to selenium supplementation.  Comparative Biochemistry and Physiology Part A: Molecular and Integrative Physiology, Part A, 157:310-318.  doi.10.1016./j.cbpa.2010.07.016.
Hardy, R.W.  2010.  Utilization of plant proteins in fish diets: effects of global demand and supplies of fishmeal.  Aquaculture Research 41, 770-776.   
Hardy, R.W., Moller, G. and L. Oram.  2010.  Effects of dietary selenomethionine on cutthroat trout (Oncorhynchus clarki bouvieri) growth and reproductive performance over a life-cycle.  Archives of Environmental Contamination and Toxicology, 58:237-245. 
Lee, K-J, Powell, M., Barrows, F.T., Smiley, S., Bechtel, P. and R.W. Hardy.   2010.  Evaluation of supplementation fish bone meal made from Alaska seafood processing byproducts and dicalcium phosphate in plant protein based diets for rainbow trout (Oncorhynchus mykiss).  Aquaculture doi:10.1016/j.aquaculture.2010.02.034.
Polinski, M.P., Fehringer, T.R., Johnson, K.A., Snekvik, K.R., LaPatra, S.E., LaFrentz, B.R., Ireland, S.C. and K.D. Cain.  2010.  Characterization of susceptibility and carrier status of burbot to IHNV, IPNV, Flavobacterium psychorophilum, Aeromonas salmonicida, and Renibacterium salmoninarum.  Journal of Fish Diseases 33:559-570.
Polinski, M.P., Jensen, N.R., Johnson, K.A., Cain, K.D. and S.C. Ireland.  2010a.   Assessment of formalin and hydrogen peroxide use during egg incubation of North Ameerican burbot.   North American Journal of Aquaculture 72: 111-117.
Poloinski, M.P., Drennan, J.D., Batts, W.N., Ireland, S.C. and K.D. Cain.  Establishment of a cell line from burbot (Lota lota) with Characterization of susceptibility to INHV, Iand VSHV.  Diseases of Aquatic Organisms.  90:15-23.
Powell, M., Hardy, R.W., Flagg, T.A., and P.A. Kline.  2010.  Proximate composition and fatty acid differences in hatchery-reared and wild Snake  River sockeye salmon overwintering in nursery lakes.  North American Journal of Fisheries Management 39, 530-537. 

2009

Campbell, N.R. and S.R. Narum.  2009.  Characterization of 22 novel single nuleotide polymorphism markers in steelhead and rainbow trout.  Molecular Ecology Resources 9:318-322. 
Campbell, N.R. and S.R. Narum.  2009.  Quantitative PCR assessment of microsatellite and SNP genotyping with variable quality DNA extracts.  Conservation Genetics 10:779-784.
Campbell, N.R. and S.R. Narum.  2009.  Identification and heat characterization of heat shock response related single nucleotide polymorphisms in O. mykiss and O. tschawtscha.  Molecular Ecology Resources 9:1460-1559.   
Chapalamadugu, K.C., Robison, B.D., Drew, R.E., Powell, M.S., Hill, R.A., Amberg, J.J., Rodnick, K.J., Hardy, R.W., Hill, M.L., and G.K. Murdoch.  2009.  Dietary carbohydrate level affects transcription factor exxpression that regulates skeletal muscle myogensis in rainbow trout.   Comparative Biochemistry and Physiology, Part B: Biochemistry and Molecular Biology 153, 66-72.   
Church, M.R., Ebersole, J.L., Rensmeyer, K.M., Couture, R.B., Barrows, F.T., Noakes and D.L.G.  2009.  Mucus: a new tissue fraction for rapid determination of fish diet switching using stable isotope analysis.  Canadian Journal of Fisheries and Aquatic Sciences 66:1-5.   
Foltz, J., Plant, K., Overturf, K., Clemens, K. and M. Powell.  2009.  Detection of Neucloespora salmonis in steelhead, Oncorhynchus mykiss (Walbaum), using quantitative polymerase chain reaction (qPCR).  Journal of Fish Diseases doi:10.111/j.1365-2761.2009.00995.x. 
Gaylord, T.G. and F.T. Barrows.  2009.  Multiple amino acid supplementations  to reduce dietary protein in plant-based rainbow trout (Oncorhynchus mykiss) feeds.  Aquaculture.  287:180-198. 
Gaylord, T.G., Barrows, F.T. and S.D. Rawles.  2009.  Apparent amino acid availability from feedstuffs in extruded diets for rainbow trout Oncorhynchus mykiss.  Aquaculture Nutrition.  doi:10.1111/j.1365-2095.2009./00678.x.Log#235637. 
Gaylord, T.G., Barrows, F.T., Rawles, S.D., Liu, K.,  Bregitzer, P., Hang, A., Obert, D. and C. Morris.  2009.  Apparent digestibility of nutrients in extruded diets from cultivars of barley and wheat selected for nutritional quality in rainbow trout (Oncorhynchus mykiss).  Aquaculture Nutrition 15:306-312. 
Hernandez, C., Olvera-Novoa, M.A., Hardy, R.W., Hermosillo, A. and B. Gonzalez.  2009.  Complete replacement of fish meal by porcine and poultry by-product meals in practical diets for Nile tilapia Oreochromis niloticus: digestibility and growth performance.  Aquaculture Nutrition (DOI:;10.1111/j.1365-2095.2008.00639.x,published on-line in advance of print.)   
Jensen, N.R. and K. D. Cain. 2009.  Burbot--Not just another cod.  Hatchery International.  Volume 10, Issue 3, Pages 1, 14 and 15. 
Kindschi, G.A., Myrick, C.A., Barrows, F.T., Toner, M. and W.C. Fraser.  2009.  Performance of Yellowstone and Snake River cutthroat crout fry fed seven different diets.  North American Journal of Aquaculture 71:325-329.   
Liu, K.S., Barrows, F.T., and D. Obert.  2009.  Dry fractionation methods to produce barley meals varying in protein, beta-glucan and starch contents.  J.  Food Sci. Published On-line: June, 30, 2009 12:12PM, 10.1111/j.1750-3841.2009.01240.x 
Narum, S.R., and N.R. Campbell.  2009.  Sequence divergence of heat shock genes within and among three Oncorhynchids.  Journal of Heredity doi:10.1093/jhered/esp081. 
Naylor, R., Hardy, R.W., Bureau, D., Chiu, A., Elliott, M., Farrell, A., Forster, I., Gatlin, D., Goldberg, R., Hua, K. and P. Nichols.  2009.  Feeding Aquaculture in an era of finite resources.  Proceedings of the National Academy of Sciences, 106 (36): 15103-15510.  
Overturf, K. and T.G. Gaylord.  2009.  Determination of relative protein degradation activity at different life stages in rainbow trout (Oncorhynchus mykiss).  Comparative Biochemistry and Physiology Part B. 152:150-160.
Overturf, K. and R.W. Hardy.  2009.  US scientists to develop standard genetic stock of rainbow trout for research studies.    Hatchery International 10:21. 
Overturf, K., LaPatra, S., Towner, R., Campbell, N. and S. R. Narum.  2009.  Relationships between growth and disease resistance in rainbow trout (Oncorhynchus mksiss).  Journal of Fish Diseases.  DOI: 10.1111/j.1365-2761. 2009.01124x.
Sealey, W., Barrows, F.T., Casten, M. and R.W. Hardy.  2009.  Dietary protein source and level affects growth in neon tetras.  North American Journal of Aquaculture 71, 320-324.   
Sealey, W., Barrows, F.T., Smith, C., Overturf, K., and S. LaPatra.  2009.  Soybean meal level and probiotics in first feeding fry diets alter the ability of rainbow trout Oncorhynchus mykiss  to utilize high levels of soybean meal during grow-out.  Aquaculture 293:195-203. 
Stephenson, J.J., Campbell, M.R., Hess, J.E., Kozfkay, C., Matala, A.P., McPhee, M.V., Moran, P., Narum, S.R., Paquin, M.M., Schlei, O., Small, M.P., Van Doornik, D.M. and K. Wenburg.  2009.  A centralized model for creating shared, standardized, microsatellite data that simplifies inter-laboratory collaboration.  Conservation Genetics 10:1145-1149. 
Campbell, N., Overturf, K. and S.R. Narum.  2009.  Characterization of 22 novel single nucleotide polymorphism markers in steelhead and rainbow trout.  Molecular Ecology Resources 9:318-322.